Main Page   Namespace List   Class Hierarchy   Alphabetical List   Compound List   Namespace Members   Compound Members   Related Pages  

ObjCryst::Crystal Member List

This is the complete list of members for ObjCryst::Crystal, including all inherited members.
AddOption(RefObjOpt *opt)ObjCryst::RefinableObj [protected]
AddPar(const RefinablePar &newRefPar)ObjCryst::RefinableObj
AddPar(RefinablePar *newRefPar)ObjCryst::RefinableObj
AddPar(RefinableObj &newRefParList)ObjCryst::RefinableObj
AddRestraint(Restraint *pNewRestraint)ObjCryst::RefinableObj
AddScatterer(Scatterer *scatt)ObjCryst::Crystal
AddScatteringPower(ScatteringPower *scattPow)ObjCryst::Crystal
AddSubRefObj(RefinableObj &)ObjCryst::RefinableObj [protected]
BeginGlobalOptRandomMove()ObjCryst::RefinableObj
BeginOptimization(const bool allowApproximations=false, const bool enableRestraints=false)ObjCryst::Crystal [virtual]
CalcDistTable(const bool fast, const REAL asymUnitMargin=4) constObjCryst::Crystal [private]
CalcDynPopCorr(const REAL overlapDist=1., const REAL mergeDist=.0) constObjCryst::Crystal
CIFOutput(ostream &os) constObjCryst::Crystal [virtual]
ClearParamSet(const unsigned long id) constObjCryst::RefinableObj
CreateParamSet(const string name="") constObjCryst::RefinableObj
Crystal()ObjCryst::Crystal
Crystal(const REAL a, const REAL b, const REAL c, const string &SpaceGroupId)ObjCryst::Crystal
Crystal(const REAL a, const REAL b, const REAL c, const REAL alpha, const REAL beta, const REAL gamma, const string &SpaceGroupId)ObjCryst::Crystal
Crystal(const Crystal &oldCryst)ObjCryst::Crystal
DeRegisterClient(RefinableObj &) constObjCryst::RefinableObj [virtual]
EndOptimization()ObjCryst::RefinableObj [virtual]
EraseAllParamSet()ObjCryst::RefinableObj
FindPar(const string &name) constObjCryst::RefinableObj [protected]
FindPar(const REAL *) constObjCryst::RefinableObj [protected]
FindParamSet(unsigned long id) constObjCryst::RefinableObj [protected]
FindScatterer(const string &scattName) constObjCryst::Crystal [private]
FixAllPar()ObjCryst::RefinableObj
FractionalToOrthonormalCoords(REAL &x, REAL &y, REAL &z) constObjCryst::UnitCell
GetBMatrix() constObjCryst::UnitCell
GetBumpMergeCost() constObjCryst::Crystal
GetClassName() constObjCryst::Crystal [virtual]
GetClockLatticePar() constObjCryst::UnitCell
GetClockMetricMatrix() constObjCryst::UnitCell
GetClockScattCompList() constObjCryst::Crystal
GetClockScattererList() constObjCryst::Crystal
GetGeneGroup(const RefinableObj &obj, CrystVector_uint &groupIndex, unsigned int &firstGroup) constObjCryst::Crystal [virtual]
GetLatticePar() constObjCryst::UnitCell
GetLatticePar(const int whichPar) constObjCryst::UnitCell
GetLogLikelihood() constObjCryst::Crystal [virtual]
GetLSQCalc(const unsigned int) constObjCryst::RefinableObj [virtual]
GetLSQDeriv(const unsigned int, RefinablePar &)ObjCryst::RefinableObj [virtual]
GetLSQObs(const unsigned int) constObjCryst::RefinableObj [virtual]
GetLSQWeight(const unsigned int) constObjCryst::RefinableObj [virtual]
GetMinDistanceTable(const REAL minDistance=0.1) constObjCryst::Crystal
GetName() constObjCryst::RefinableObj [virtual]
GetNbLSQFunction() constObjCryst::RefinableObj [virtual]
GetNbOption() constObjCryst::RefinableObj
GetNbPar() constObjCryst::RefinableObj
GetNbParNotFixed() constObjCryst::RefinableObj
GetNbScatterer() constObjCryst::Crystal
GetOption(const unsigned int i)ObjCryst::RefinableObj
GetOption(const unsigned int i) constObjCryst::RefinableObj
GetOrthMatrix() constObjCryst::UnitCell
GetOrthonormalCoords(const REAL x, const REAL y, const REAL z) constObjCryst::UnitCell
GetPar(const long i)ObjCryst::RefinableObj
GetPar(const long i) constObjCryst::RefinableObj
GetPar(const string &name)ObjCryst::RefinableObj
GetPar(const string &name) constObjCryst::RefinableObj
GetPar(const REAL *)ObjCryst::RefinableObj
GetPar(const REAL *) constObjCryst::RefinableObj
GetParamSet(const unsigned long setId) constObjCryst::RefinableObj
GetParamSet(const unsigned long setId)ObjCryst::RefinableObj
GetParamSet_ParNotFixedHumanValue(const unsigned long setId, const long parNumber) constObjCryst::RefinableObj
GetParNotFixed(const long i)ObjCryst::RefinableObj
GetParNotFixed(const long i) constObjCryst::RefinableObj
GetRefParListClock() constObjCryst::RefinableObj
GetRestraintCost() constObjCryst::RefinableObj [virtual]
GetScatt(const string &scattName)ObjCryst::Crystal
GetScatt(const string &scattName) constObjCryst::Crystal
GetScatt(const long scattIndex)ObjCryst::Crystal
GetScatt(const long scattIndex) constObjCryst::Crystal
GetScattererRegistry()ObjCryst::Crystal
GetScatteringComponentList() constObjCryst::Crystal [virtual]
GetScatteringPower(const string &name)ObjCryst::Crystal
GetScatteringPower(const string &name) constObjCryst::Crystal
GetScatteringPowerRegistry()ObjCryst::Crystal
GetScatteringPowerRegistry() constObjCryst::Crystal
GetSpaceGroup() constObjCryst::UnitCell
GetSpaceGroup()ObjCryst::UnitCell
GetSubObjRegistry()ObjCryst::RefinableObj
GetSubObjRegistry() constObjCryst::RefinableObj
GLInitDisplayList(const bool onlyIndependentAtoms=false, const REAL xMin=-.1, const REAL xMax=1.1, const REAL yMin=-.1, const REAL yMax=1.1, const REAL zMin=-.1, const REAL zMax=1.1, const bool displayNames=false) constObjCryst::Crystal [virtual]
GlobalOptRandomMove(const REAL mutationAmplitude, const RefParType *type=gpRefParTypeObjCryst)ObjCryst::Crystal [virtual]
Init(const REAL a, const REAL b, const REAL c, const REAL alpha, const REAL beta, const REAL gamma, const string &SpaceGroupId, const string &name)ObjCryst::Crystal [private, virtual]
InitOptions()ObjCryst::Crystal [private, virtual]
InitRandomSeedFromTime() constObjCryst::RefinableObj [protected]
InitRefParList()ObjCryst::UnitCell [protected]
IsBeingRefined() constObjCryst::RefinableObj
mBumpMergeCostObjCryst::Crystal [private]
mBumpMergeCostClockObjCryst::Crystal [private]
mBumpMergeParClockObjCryst::Crystal [private]
mClientObjRegistryObjCryst::RefinableObj [protected]
mClockDynPopCorrObjCryst::Crystal [private]
mClockNeighborTableObjCryst::Crystal [private]
mClockScattCompListObjCryst::Crystal [private]
mClockScattererListObjCryst::Crystal [private]
mDeleteRefParInDestructorObjCryst::RefinableObj [protected]
mDisplayEnantiomerObjCryst::Crystal [private]
mDistTableClockObjCryst::Crystal [private]
MillerToOrthonormalCoords(REAL &x, REAL &y, REAL &z) constObjCryst::UnitCell
mIsbeingRefinedObjCryst::RefinableObj [protected]
mLatticeClockObjCryst::Crystal [private]
mLSQDerivObjCryst::RefinableObj [protected]
mNameObjCryst::RefinableObj [protected]
mNbRefParNotFixedObjCryst::RefinableObj [protected]
mOptionRegistryObjCryst::RefinableObj [protected]
mRandomMoveIsDoneObjCryst::RefinableObj [protected]
mRefParListClockObjCryst::RefinableObj [protected]
mRefparNotFixedIndexObjCryst::RefinableObj [protected]
mScattCompListObjCryst::Crystal [private]
mScattererRegistryObjCryst::Crystal [private]
mScatteringPowerRegistryObjCryst::Crystal [private]
mSubObjRegistryObjCryst::RefinableObj [protected]
mUseDynPopCorrObjCryst::Crystal [private]
mvBumpMergeParObjCryst::Crystal [private]
mvDistTableSqObjCryst::Crystal [private]
mvpRefParObjCryst::RefinableObj [protected]
mvpRestraintObjCryst::RefinableObj [protected]
mvpSavedValuesSetObjCryst::RefinableObj [protected]
operator=(const RefinableObj &old)ObjCryst::RefinableObj
OrthonormalToFractionalCoords(REAL &x, REAL &y, REAL &z) constObjCryst::UnitCell
OrthonormalToMillerCoords(REAL &x, REAL &y, REAL &z) constObjCryst::UnitCell
POVRayDescription(ostream &os, bool onlyIndependentAtoms=false) constObjCryst::Crystal
Prepare()ObjCryst::RefinableObj [protected, virtual]
PrepareForRefinement() constObjCryst::RefinableObj
Print(ostream &os=cout) constObjCryst::Crystal [virtual]
Print() const (defined in ObjCryst::RefinableObj)ObjCryst::RefinableObj [virtual]
PrintMinDistanceTable(const REAL minDistance=0.1, ostream &os=cout) constObjCryst::Crystal
RandomizeConfiguration()ObjCryst::RefinableObj [virtual]
RefinableObj()ObjCryst::RefinableObj
RefinableObj(const bool internalUseOnly)ObjCryst::RefinableObj
RefinableObj(const RefinableObj &old)ObjCryst::RefinableObj
RegisterClient(RefinableObj &) constObjCryst::RefinableObj [virtual]
RemovePar(RefinablePar *refPar)ObjCryst::RefinableObj
RemoveRestraint(Restraint *pRestraint)ObjCryst::RefinableObj
RemoveScatterer(Scatterer *scatt)ObjCryst::Crystal
RemoveScatteringPower(ScatteringPower *scattPow)ObjCryst::Crystal
RemoveSubRefObj(RefinableObj &)ObjCryst::RefinableObj [protected]
ResetDynPopCorr() constObjCryst::Crystal
ResetParList()ObjCryst::RefinableObj
RestoreParamSet(const unsigned long id)ObjCryst::RefinableObj
SaveParamSet(const unsigned long id) constObjCryst::RefinableObj
SetBumpMergeDistance(const ScatteringPower &scatt1, const ScatteringPower &scatt2, const REAL dist=1.5)ObjCryst::Crystal
SetBumpMergeDistance(const ScatteringPower &scatt1, const ScatteringPower &scatt2, const REAL dist, const bool allowMerge)ObjCryst::Crystal
SetDeleteRefParInDestructor(const bool b)ObjCryst::RefinableObj
SetGlobalOptimStep(const RefParType *type, const REAL step)ObjCryst::RefinableObj
SetLimitsAbsolute(const string &parName, const REAL min, const REAL max)ObjCryst::RefinableObj
SetLimitsAbsolute(const RefParType *type, const REAL min, const REAL max)ObjCryst::RefinableObj
SetLimitsProportional(const string &parName, const REAL min, const REAL max)ObjCryst::RefinableObj
SetLimitsProportional(const RefParType *type, const REAL min, const REAL max)ObjCryst::RefinableObj
SetLimitsRelative(const string &parName, const REAL min, const REAL max)ObjCryst::RefinableObj
SetLimitsRelative(const RefParType *type, const REAL min, const REAL max)ObjCryst::RefinableObj
SetName(const string &name)ObjCryst::RefinableObj [virtual]
SetParIsFixed(const long parIndex, const bool fix)ObjCryst::RefinableObj
SetParIsFixed(const string &parName, const bool fix)ObjCryst::RefinableObj
SetParIsFixed(const RefParType *type, const bool fix)ObjCryst::RefinableObj
SetParIsUsed(const string &parName, const bool use)ObjCryst::RefinableObj
SetParIsUsed(const RefParType *type, const bool use)ObjCryst::RefinableObj
SetUseDynPopCorr(const int use)ObjCryst::Crystal
TagNewBestConfig() constObjCryst::RefinableObj [virtual]
UnFixAllPar()ObjCryst::RefinableObj
UnitCell()ObjCryst::UnitCell
UnitCell(const REAL a, const REAL b, const REAL c, const string &SpaceGroupId)ObjCryst::UnitCell
UnitCell(const REAL a, const REAL b, const REAL c, const REAL alpha, const REAL beta, const REAL gamma, const string &SpaceGroupId)ObjCryst::UnitCell
UnitCell(const UnitCell &oldCryst)ObjCryst::UnitCell
UpdateDisplay() constObjCryst::RefinableObj [virtual]
VBumpMergePar typedefObjCryst::Crystal [private]
XMLInput(istream &is, const XMLCrystTag &tag)ObjCryst::Crystal [virtual]
XMLOutput(ostream &os, int indent=0) constObjCryst::Crystal [virtual]
~Crystal()ObjCryst::Crystal
~RefinableObj()ObjCryst::RefinableObj [virtual]
~UnitCell()ObjCryst::UnitCell

Generated on Wed Jun 25 23:26:10 2003 for ObjCryst++ by doxygen1.2.18