KEYWORD
(SHORT) |
KEYWORD
(LONG) |
DESCRIPTION |
EIS | EISENBERG |
Eisenberg normalized consensus hydrophobicity scale
(reference 1, see the bottom of this page!). |
KD | KD | Kyte-Doolittle hydropathy scale (reference 2). |
INT | INTERFACE | Interface scale from the Stephen White laboratory (ref. 3). |
OCT | OCT |
Octanol scale from the Stephen White laboratory (ref. 4).
The keyword OCT was introduced in version 1.4 of garlic, to replace the keyword WHI (WHITE). |
IN2 | IN2 | Modified interface scale: HIS, ASP and GLU neutral. |
DIF | DIFFERENTIAL | Differential scale: octanol minus interface. |
NAME | EIS | KD | INT | OCT | IN2 | DIF |
ALA | 0.62 | 1.80 | -0.17 | -0.50 | -0.17 | -0.33 |
ARG | -2.53 | -4.50 | -0.81 | -1.81 | -0.81 | -1.00 |
ASN | -0.78 | -3.50 | -0.42 | -0.85 | -0.42 | -0.43 |
ASP | -0.90 | -3.50 | -1.23 | -3.64 | 0.07 | -2.41 |
CYS | 0.29 | 2.50 | 0.24 | 0.02 | 0.24 | -0.22 |
GLN | -0.85 | -3.50 | -0.58 | -0.77 | -0.58 | -0.19 |
GLU | -0.74 | -3.50 | -2.02 | -3.63 | 0.01 | -1.61 |
GLY | 0.48 | -0.40 | -0.01 | -1.15 | -0.01 | -1.14 |
HIS | -0.40 | -3.20 | -0.96 | -2.33 | -0.17 | -1.37 |
ILE | 1.38 | 4.50 | 0.31 | 1.12 | 0.31 | 0.81 |
LEU | 1.06 | 3.80 | 0.56 | 1.25 | 0.56 | 0.69 |
LYS | -1.50 | -3.90 | -0.99 | -2.80 | -0.99 | -1.81 |
MET | 0.64 | 1.90 | 0.23 | 0.67 | 0.23 | 0.44 |
PHE | 1.19 | 2.80 | 1.13 | 1.71 | 1.13 | 0.58 |
PRO | 0.12 | -1.60 | -0.45 | -0.14 | -0.45 | 0.31 |
SER | -0.18 | -0.80 | -0.13 | -0.46 | -0.13 | -0.33 |
THR | -0.05 | -0.70 | -0.14 | -0.25 | -0.14 | -0.11 |
TRP | 0.81 | -0.90 | 1.85 | 2.09 | 1.85 | 0.24 |
TYR | 0.26 | -1.30 | 0.94 | 0.71 | 0.94 | -0.23 |
VAL | 1.08 | 4.20 | -0.07 | 0.46 | -0.07 | 0.53 |
ASX | -0.84 | -3.50 | -0.83 | -2.25 | -0.18 | -1.38 |
GLX | -0.80 | -3.50 | -1.30 | -2.20 | -0.29 | -0.90 |
UNK | 0.00 | -0.49 | -0.14 | -0.52 | -0.38 | -0.29 |
COMMAND | DESCRIPTION |
sca eis
|
Use the scale prepared by David Eisenberg. |
sca int |
Use the experimental interface scale from
the Stephen White laboratory. |