A New Large-Area Detector for the Diffractometer D19

V.T. Forsyth and S.A. Mason

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D19 is a diffractometer equipped with a 2-d multiwire detector that has an aperture of 4° by 64°. The instrument has proven applications in biology, chemistry, physics, materials science and polymer science. It is the only instrument at the ILL that can record single crystal diffraction data to atomic resolution from small samples with relatively large unit cells; it is also the only instrument in the world that can perform high-angle neutron fibre diffraction experiments.

The limited size of the existing detector means that at any given instant of time, approximately 95% of the available diffraction data is unrecorded. Our proposal is to replace this detector by an array of 8 area detectors, producing a gain in efficiency of up to a factor of 25. The benefits for the user community in each of the areas where D19 is heavily demanded are clear and quantifiable. The development will have a huge impact on the quality of D19 experiments and will considerably widen the scope of both single crystal and fibre diffraction experiments that can be carried out on the instrument.
 
 

1.1 Scientific Background
D19 is unique because it combines a high flux monochromatic neutron beam and an area detector. This provides the user community with the only instrument capable of surveying reciprocal space for small samples with large unit cells, for d-spacings from 100Å to 0.5Å. 

1.1.1 Small Molecules. In single crystal work on small molecule systems, D19 allows the determination of the location of light atoms amongst heavy ones and the accurate characterisation of liganded H and H2 and of hydrogen bonding and hydrogen disorder in studies of organic and inorganic molecules, complexes, solvates, and adducts. Such work has been the mainstay of D19 in the 1990’s; examples are given in section 1.2.2 from the fields in chemistry and physics that are most likely to be affected by this proposal.

1.1.2 Larger Molecules. Some larger molecules of biological interest have also been studied on D19, such as vitamin B12 (Jogl et al, 1999), lysozyme (Bouquiere et al, 1993), and haemoglobin (Waller, 1989). The interest here is obvious – information on proton positions and hydration is vital for understanding biological processes. As can be seen from Figure 1, data from monochromatic neutron diffraction studies allows H or D positions to be determined at a much higher level of significance than is obtainable with x-rays. Although it is true that such information can be obtained from high resolution x-ray diffraction when crystals diffract to 1.2Å or better, it is also true that only a small fraction of crystals diffract to this resolution.

Figure 1: "Omit" density maps calculated for a D2O molecule located in the crystal structure of coenzyme B12.  (a) 1A map showing the density determined from the D19 data and (b) 0.9A map showing the density from a synchrotron x-ray study (Langan et al, 1999).

Paradoxically it may in many cases be easier to grow crystals to neutron size than to produce crystals that diffract to 1.2Å resolution. Neutron diffraction allows proton positions to be determined with high precision using crystals that diffract to much lower resolution of the order of ~2Å. Where isotopic replacement of H2O by D2O is possible, it allows centre of gravity positions for water molecules to be unambiguously located from difference maps at even lower resolution.

Although neutron experiments on small proteins are at the limit of what can be achieved in reasonable beamtime allocations using the current detector, the use of a monochromatic beam and fine step scanning in omega, with frame readout times as small as 5 or 10 seconds, has clear advantages in situations where the sample background is high (e.g. for samples with high H content where deuteration is either not desirable or not feasible).
 

1.1.3 Fibre Diffraction. The availability of an area detector has also meant that D19 can be used to record high-angle neutron fibre diffraction patterns. The first experiments of this type were on DNA hydration and provided the first information on hydration in polymeric DNA. The studies are also important because fibres allow the study of DNA conformations that have not been observed in oligonucleotide single crystals and also of stereochemical changes that occur during conformational transitions (see Shotton et al, 1997). The same techniques have since been used to study hyaluronic acid, filamentous viruses, and have recently produced some outstanding results from cellulose (Nishiyama et al, in press). Similar methods have been used to study hydrogen atoms in aromatic polymers (Mahendrasingam et al, 1992) and are currently being developed for the study of polymers such as Nylon 66. There is increasing interest from industrial collaborators in the use of fibre diffraction methods in combination with specific deuteration to study changes in polymer structure as a function of chemical composition, temperature, and drawing processes. All of the neutron fibre diffraction studies provide information that cannot be obtained from complementary x-ray fibre diffraction studies.


 
1.2 New Scientific Opportunities
The limited size of the area detector means that D19 is much less efficient than it should be. This has been repeatedly pointed out by users, who see the loss of data as indefensible given the notional costs that are attached to the use of neutron beams. This was most recently pointed out in the survey conducted for the Scientific Council Review of ILL single crystal diffraction instruments (K. Yvon, 1998). In the following sections, we demonstrate the implications of our proposal for scientific work on D19 by outlining some recent projects at the present limits of viability.

1.2.1 Biological Systems. For reasons that are evident from section 1.1.2, a gain of a factor of ~25 will have an enormous impact on the scope of biological neutron crystallography. Results comparable to those currently obtained in a two week experiment will be obtained in half a day, and very substantial improvements will therefore be possible in reasonable allocations of beamtime. This will open the way to new projects (smaller crystals, larger units cells) that cannot be considered at the moment.

The implications are equally significant for fibre diffraction studies. This is very simply illustrated in Figure 2 which shows two neutron fibre diffraction patterns recorded from DNA.

Figure 2: Neutron fibre diffraction patterns recorded from B-DNA hydrated (a) with H2O and (b) with D2O.
The counting statistics in each pattern are relatively poor and the individual "strips" corresponding to each detector position are clear. The new array will allow all of this data to be recorded in two exposures. Such a gain will be invaluable for work on crystalline fibres, but will be absolutely crucial for work on samples that give continuous layer line diffraction. This type of diffraction is very common in biological fibres - for example in conformational transitions in nucleic acids (Shotton et al, 1998), filamentous viruses, and in industrial polymer systems.

1.2.2 Chemistry and Physics.
1.2.2.1 Supramolecular Organic Complexes. Detailed structural information on hydrogen atoms comes mainly from neutron diffraction. As new areas are explored there is a growing demand for such studies eg of N-H…p intermolecular interactions in the aminophenol crystal structures (Allen et al, 1997). Another application is work aimed at understanding how in compounds containing acidic C-H groups, weak C-H...X or C-H...p bonds aid in building up supramolecular arrays. Such compounds, for example alkyl (triphenyl) – phosphonium aryloxides, may contain 100 or more atoms in the asymmetric unit, and at present can be studied only if large crystals are available.

1.2.2.2 Inorganic and organometallic complexes. Here, accurate positions of light atoms such as hydrogen are sought in the presence of heavy atoms. A typical example is the successful location of and determination of bond lengths for H atoms in the non-octahedral hexanuclear cluster H2Os6(CO)18 (Bau et al, 1997). However, anisotropic refinement was not possible because of the small crystal size, and the precision in bond lengths was barely adequate. Even more difficult, because of the high hydrogen content, poor crystal quality and larger asymmetric unit, was the study by Muller et al (1998) of a uranium complex, C36H53BF15N3Si6U. 3.5C6D6. Again, the lighter atoms were all found, and the neutron refinement proved that a m2-H2 ligand was not present. The electron deficiency of the uranium atoms was explained as effectively compensated by the formation of multi-centre bonds between U and S-CH2 units. However, the precision, e.g. 0.008Å for a U-H distance, was only four times better than in the very accurate X-ray study, and a factor of 5-10 worse than ideal. A dramatic increase in detector area is needed.

1.2.2.3 Liquid Crystals Studies. One of the aims of studies of liquid crystals is to link liquid crystalline properties to molecular structure. A study of 4-n-pentyloxybenzylidene-4’-n-heptyl quiline on D19 has shown that, unlike other techniques, neutrons can provide information on both molecular structure and orientation distribution by exploiting the difference in scattering from H and D (Richardson et al, 1990). The quality of the data was limited by the time available for data collection; one day for each H/D mixture.

1.2.2.4 Quasicrystals Of the 30 or so known quasicrystalline compounds, many are of technological interest, e.g. as hard, high-temperature resistant substitutes for teflon. Models of the atomic structure are not as accurate as for conventional 3-d periodic structures, partly because, on a conventional diffractometer, only a small proportion of the available number of reflections in a given volume of reciprocal space can be observed. Recent measurements on Al70Pd20Mn10 on D19 have for the first time allowed whole volumes of reciprocal space to be measured, giving over five times the number of unique reflections previously recorded with a dynamic range of more than four orders of magnitude. Because of the 6-d lattice needed to describe quasicrystals, a monochromatic beam is vital. A related application is observation of diffuse scattering and incommensurate satellites, as done for the decagonal phase of Al65CO15Ni15 (Frey et al, in press). Only a high-quality large area detector will enable such measurements to be extended


 
2. User base
Chemical Crystallography 30 (total)
Inorganic chemistry 15
Organic chemistry 15
   
Biological Structures 20 (total)
Fibre diffraction 15
Coenzyme cob(II)alamin & cyclodextrins 4
RNA octamer crystals 1
   
Physics & Materials Science 10 (total)
Phase transitions, super- & incommensurate structures & quasicrystals 7
Other 3

Although extrapolation from the present user base is hazardous since a factor of 25 in detector area will alter the scope of experiments on D19, it is obvious that this proposal will have a large impact on each of these main areas. In particular, the development will widen the user base for single crystal studies of large organic compounds, inorganic complexes, and small proteins, as well as for small molecule work where only small crystals can be obtained. The fibre diffraction user base will also be dramatically affected. Until now neutron fibre diffraction experiments have been carried out by users who are able to prepare large samples; for their part this requires a considerable investment in time and effort. It has been very clear from the last few annual CCP13 (BBSRC-funded collaborative computing project for fibre diffraction) meetings that the fibre diffraction community has interest in experiments of this type and that the general area will develop rapidly once the sample requirements change.
 

3. Proposal: the D19 detector upgrade
State of the art thermal neutron psd’s are either multiwire or microstrip (Velletaz et al, 1996) gas detectors or image plate detectors. We have selected the ILL’s microstrip technology because many D19 applications require rapid step-scan readout times, and because tests on H-containing compounds with the LADI image plate detector on D19 gave an unacceptably low peak to background ratio (Langan et al, 1997).

We propose to replace the D19 detector by an array of eight 2-dimensional microstrip PSDs. Each module will be 230 x 230 mm with a detection area of 192 x 192 mm, a resolution of 3mm, and an efficiency of 50%. The eight detectors will be mounted on a curved surface of either 60cm or 90cm radius (see Figure 3). This relatively large maximum radius is chosen to increase the signal to incoherent background ratio for hydrogen-containing samples. At this radius the detector array subtends an angle of 34.4° x 34.4° at the sample. When the incoherent background is small enough, the distance from the sample can be reduced to 60cm, in order to increase the number of reflections striking the detectors. At 60cm the angle subtended at the sample will be 51.4° x 51.4°. The projected gain in efficiency over the present D19 is a factor of up to 25. This is greater than the increase in solid angle (4.63 at 90 cm and 10.33 at 60 cm) because of large edge effects in the present narrow detector.

References 1. Allen, Hoy, Howard, Thalladi, Desiraju, Wilson & McIntyre, J.Am.Chem.Soc. 119, 3477 (1997); 2. Bau, Mason, Li, Wong, J. Amer. Chem. Soc., 119, 11992-3 (1997); 3. Bouquiere, Finney, Lehmann, ,J. Chem. Soc. Far. Trans. 89, 2701 (1993); 4. Frey, Hradil, Grushko, McIntyre, Quasicrystals, World Scientific (in press); 5. Jogl, Langan, Kratky (in preparation); 6. Langan, Denny, Mahendrasingam, Mason, Jaber, J. Appl. Cryst. 29, 383 (1996); 7. Langan, Myles, Lehmann, Wilkinson & Mason, ILL Internal Report ILL97LA01T (1997); 8. Langan, Lehmann, Wilkinson, Jogl, Kratky, Acta Cryst D55, 51 (1999); 9. .Mahendrasingam, Al-Hayalee, Forsyth, Langan, Fuller, Oldman, Blundell, Mason, Physica B 180/181, 528-530 (1992); 10. Muller, Williams, Doerrer, Leech, Mason, Green, Prout, Inorg. Chem. 37, 1315-1323 (1998); 11. Nishiyama, Y., Okano, T., Langan, P. & Chanzy, H., Int. J. .Biol. Macr. (in press); 12. Richardson, Allman, McIntyre, Liquid Crystals7, 701-719 (1990); 13. Shotton, Pope, Forsyth, Langan, Giesen, Dauvergne, Fuller, Biophysical Chemistry69 (1), 85 (1997); 14. Shotton, Pope, Forsyth, Archer, Denny, Langan, Ye, Boote, J. Appl. Cryst.31, 758 (1998); 15. Velletaz, Oed, Assaf, Proc. International Workshop on Microstrip Gas Chambers (Eds. Contara & Sauli), Lyon (1996); 16. Waller, PhD thesis, University of York (1989); 17. Yvon, Minutes of the ILL Sientific Council, April 1998.

We thank Paul Langan, Michael Walsh and Garry McIntyre for their contributions to this project. We are also extremely grateful for the ongoing efforts of the ILL detector group, without which the use of microstrip modules in the proposed new D19 array will not be possible.


Figure 3: Views taken from the designs for the new D19 detector system. Bottom: the detector array as seen from the sample position, illustratingthe large solid angle that will be captured. Top: the detectors will be arranged in a curved array about the sample position.